Nonprofit Compliance Checklist: What Every Organization Needs to Stay Compliant

Running a nonprofit is about more than delivering impact — it’s also about staying legally compliant every step of the way. Whether you’re launching a new 501(c)(3) or managing a well-established organization, compliance isn’t optional. It’s the foundation that allows you to operate, fundraise, and grow with confidence.

To help simplify what can often feel overwhelming, we’ve created a practical nonprofit compliance checklist that covers key state and federal requirements. Use it to ensure your organization stays in good standing — and link back here as your go-to reference.

💡 Need a trusted partner to manage your nonprofit compliance? Learn more about our compliance services.


Nonprofit Compliance Checklist

 

✅ 1. Maintain 501(c)(3) Federal Tax-Exempt Status

Once you’ve received 501(c)(3) status from the IRS, you must actively maintain it by fulfilling annual reporting and recordkeeping obligations.

Key Requirements:

  • File IRS Form 990, 990-EZ, or 990-N annually depending on your revenue.

  • Keep your organization’s mission and programs aligned with your original tax-exempt purpose.

  • Avoid excessive unrelated business income, which can trigger IRS scrutiny.

📌 Missing an IRS filing for three consecutive years can result in automatic revocation of your tax-exempt status.

👉 Need help with IRS Form 990 filings? Our compliance team can handle it for you.


✅ 2. Register and Renew State Charity Registrations

If your nonprofit solicits donations — even online — you may be required to register with the state’s charity office. Many states also require annual renewals and financial disclosures.

Key Requirements:

  • Complete initial charitable solicitation registration in the states where you raise funds.

  • File annual renewal documents, which may include financial reports or IRS Form 990.

  • Be aware of differing requirements for online fundraising platforms.

📌 Over 40 states regulate charitable solicitation — and failing to register can result in fines or public listing as noncompliant.


✅ 3. Stay in Good Standing with State Corporate Filings

To legally operate in your home state, you must maintain corporate good standing. This includes regular filings and fees.

Key Requirements:

  • File annual reports with your Secretary of State or equivalent agency.

  • Maintain a registered agent with a physical address in your state.

  • Update corporate information (like board members or address) as needed.

📌 Neglecting state corporate filings can lead to administrative dissolution of your nonprofit.


✅ 4. Uphold Governance and Board Responsibilities

Nonprofit Compliance Checklist - Board Responsibilities

Strong governance practices aren’t just best practice — they’re part of staying compliant.

Key Requirements:

  • Adopt and regularly review your bylaws.

  • Hold regular board meetings with recorded meeting minutes.

  • Maintain and enforce a conflict-of-interest policy.

📌 Many states and funders require documentation of active board governance.

💡 Bonus: Consider providing your board with a compliance overview annually.


✅ 5. Ensure Financial Transparency and Internal Controls

Transparent, well-organized finances are essential for audits, grant applications, and IRS compliance.

Key Requirements:

  • Maintain accurate books using nonprofit-specific software (e.g., QuickBooks for Nonprofits).

  • Reconcile bank statements monthly.

  • Track restricted vs. unrestricted funds.

  • Implement segregation of duties for financial tasks.

👉 Need help setting up compliant financial systems? Our nonprofit bookkeeping team is here to help.


✅ 6. Understand Fundraising and Donation Rules

Fundraising is highly regulated, especially when it comes to raffles, auctions, and digital campaigns.

Key Requirements:

  • Ensure compliance with charitable solicitation laws before launching campaigns.

  • Provide donors with required gift acknowledgment letters.

  • Comply with raffle and gaming laws in your state.

  • Follow state-specific rules when using online giving platforms (e.g., Givebutter, Classy).

📌 Accepting donations online often triggers registration requirements in multiple states.


✅ 7. Comply with Employment and Payroll Laws

Hiring staff or contractors introduces additional legal obligations.

Key Requirements:

  • Classify workers correctly (employee vs. independent contractor).

  • Withhold and remit payroll taxes.

  • Provide necessary insurance (unemployment, workers’ comp).

  • Follow Department of Labor and IRS employment regulations.

📌 Noncompliance with payroll laws can lead to IRS penalties and loss of trust.


✅ 8. Protect Donor Data and Confidential Information

In the digital age, data privacy and cybersecurity are essential components of compliance.

Key Requirements:

  • Collect and store donor data securely.

  • Use reputable platforms for donation processing and email marketing.

  • Be transparent in your privacy policy about how you handle data.

💡 Consider implementing a simple data security policy and training staff on best practices.

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